As the leaves begin to turn and the air gets that familiar crispness, I can't help but crave some cozy baking. Enter these Gluten Free Pumpkin Muffins with High Protein and Paleo Chocolate Chips—a delightful treat that captures all the warmth of fall. Not only are they moist and tender, but they also pack a protein punch with collagen peptides, making them perfect for breakfast or a healthy snack. Plus, who could resist those melty, paleo chocolate chips nestled within? They’re not just indulgent; they're also gluten-free and perfect for anyone looking to elevate their baking game. Curious to discover how to make these wonderfully easy muffins that will have your kitchen smelling like autumn? Let’s dive into the recipe!

Why are these muffins a must-try?
Flavorful, these Gluten Free Pumpkin Muffins burst with rich pumpkin and warm spices that scream fall comfort. Nutritious and high in protein thanks to collagen peptides, they’re a guilt-free way to indulge. Versatile, you can enjoy them as a breakfast option or an on-the-go snack. Quick and easy, the recipe comes together with minimal effort, perfect for busy bakers. Plus, who can resist the combination of pumpkin and deliciously melty paleo chocolate chips? Your family will be asking for seconds! Enjoy them warm with a steaming cup of coffee for the ultimate treat.
Gluten Free Pumpkin Muffin Ingredients
Get ready to fill your kitchen with the comforting aromas of fall!
For the Muffins
• Gluten Free 1-to-1 Flour – Provides structure and a tender crumb; ensure it’s a high-quality blend for best results.
• Collagen Peptides – Adds protein without influencing flavor; substitute with a plant-based protein powder for a vegan option.
• Pumpkin Puree – Gives moisture and wonderful pumpkin flavor; feel free to use either canned or fresh pumpkin puree.
• Eggs – Binds the ingredients while adding moisture; replace with flax or chia eggs for a vegan alternative (1 tablespoon ground seeds + 3 tablespoon water per egg).
• Coconut Sugar – Offers natural sweetness with a caramel flair; brown sugar is a great substitute if needed.
• Avocado Oil (or Coconut Oil) – Keeps muffins delightfully moist; any neutral oil can be used in its place.
• Vanilla Extract – Enhances the overall flavor of the muffins.
• Baking Powder & Baking Soda – Essential leavening agents for a perfect rise.
• Pumpkin Pie Spice – Infuses lovely warm spice notes; cinnamon and nutmeg can be used if pumpkin pie spice is unavailable.
• Kosher Salt – Balances and enhances the flavor of the muffins.
• Paleo Chocolate Chips – Adds indulgent sweetness; high-quality dark chocolate chips work as a fantastic alternative.
Now that you have your ingredients ready, you’re one step closer to baking these delightful Gluten Free Pumpkin Muffins with High Protein and Paleo Chocolate Chips! Enjoy the process as much as the result!
Step‑by‑Step Instructions for Gluten Free Pumpkin Muffins with High Protein and Paleo Chocolate Chips
Step 1: Preheat the Oven
Start by preheating your oven to 375°F (190°C). This is the perfect temperature to ensure your Gluten Free Pumpkin Muffins rise beautifully and get that lovely golden color. While the oven is heating, prepare a muffin tin by lining it with muffin liners or greasing the cups with a bit of oil to prevent sticking.
Step 2: Mix the Dry Ingredients
In a large mixing bowl, whisk together the gluten free 1-to-1 flour, collagen peptides, pumpkin pie spice, baking powder, baking soda, and kosher salt. Keep whisking until all the dry ingredients are fully combined and there are no lumps. This step is crucial as it ensures an even distribution of leavening agents, resulting in perfectly fluffy muffins.
Step 3: Combine the Wet Ingredients
In another bowl, mix the pumpkin puree, eggs, coconut sugar, avocado oil, and vanilla extract until smooth and well blended. The texture should be creamy, and the sugars should be dissolved. This mixture brings moisture and flavor to your Gluten Free Pumpkin Muffins, making them deliciously soft and tender.
Step 4: Combine Dry and Wet Mixtures
Gently fold the dry ingredients into the wet mixture until just combined, being careful not to overmix. A few streaks of flour are okay; this will help your muffins stay light and fluffy. It's important to maintain this balance to achieve the best texture in your muffins filled with high protein and paleo chocolate chips.
Step 5: Fold in Chocolate Chips
Once combined, carefully fold in the paleo chocolate chips, ensuring they are evenly distributed throughout the muffin batter. Take a moment to enjoy the rich aroma of the mixture; it smells like autumn! Let the batter rest for about 15 minutes to improve the texture and allow the flavors to meld together beautifully.
Step 6: Fill the Muffin Cups
Divide the rested batter evenly among the muffin cups, filling each about three-quarters full. If you’d like an extra touch of indulgence, sprinkle some additional paleo chocolate chips on top of each muffin before baking. This way, your Gluten Free Pumpkin Muffins will have a delightful melty chocolate finish.
Step 7: Bake the Muffins
Place your muffin tin in the preheated oven and bake for 22-25 minutes. The muffins are done when the tops spring back lightly when pressed, and a toothpick inserted in the center comes out clean or with a few moist crumbs. Keep an eye on them as they bake, filling your kitchen with a cozy aroma.
Step 8: Cool and Serve
Once baked, remove the muffin tin from the oven and let the muffins cool in the tin for 15 minutes. This cooling period helps them set properly and makes them easier to remove. After cooling, transfer your delicious Gluten Free Pumpkin Muffins to a wire rack to cool completely, ready to be enjoyed fresh and warm.

Gluten Free Pumpkin Muffins Variations
Feel free to customize your gluten-free pumpkin muffins with these exciting twists that will elevate your baking experience!
- Nutty Delight: Add chopped walnuts or pecans for a delightful crunch that complements the softness of the muffin.
- Vegan Option: Replace eggs with flax or chia eggs (1 tablespoon ground seeds + 3 tablespoon water per egg) for a plant-based version.
- Sweet Potato Swap: Use mashed sweet potato instead of pumpkin puree for an alternative that adds a new layer of flavor.
- Spice It Up: Enhance the warmth by increasing pumpkin pie spice or adding ginger for a zesty kick—perfect for spice lovers!
- Almond Flour Twist: Mix in half almond flour for extra moisture and nuttiness; this will bring a whole new texture dimension.
- Choco-Fruit Fusion: Fold in dried cranberries or raisins for a sweet surprise that balances perfectly with the chocolate chips.
- Coconut Bliss: Stir in shredded coconut for added sweetness and a slight tropical flavor that pairs beautifully with pumpkin.
- Zesty Citrus: Grate some orange or lemon zest into the batter for a fresh citrus note that brightens up the overall flavor profile.
Feel inspired to explore these variations, and let your creativity run wild! You can create a unique twist each time, making these muffins a new experience every bake. If you're keen on other healthful recipes, be sure to check out my Gluten-Free Banana Bread or Almond Flour Chocolate Chip Cookies!
Expert Tips for Gluten Free Pumpkin Muffins
Resting Time: Allow the batter to rest for 15 minutes before baking to improve texture and enhance the flavors in your Gluten Free Pumpkin Muffins.
Gentle Mixing: Avoid overmixing the batter. Stop mixing as soon as you see a few streaks of flour, ensuring your muffins stay tender and fluffy.
Cool in Tin: Cool the muffins in the tin for about 15 minutes after baking. This helps them set properly and prevents them from becoming too dense.
Ingredient Quality: Use high-quality gluten free 1-to-1 flour for the best structure and texture. A lower-quality flour can lead to disappointing results.
Chocolate Chip Placement: Sprinkle extra paleo chocolate chips on top before baking for an indulgent melty finish that enhances the overall presentation.
Make Ahead Options
These Gluten Free Pumpkin Muffins with High Protein and Paleo Chocolate Chips are perfect for busy meal prep! You can prepare the batter up to 24 hours in advance by mixing the wet and dry ingredients separately and storing them in the refrigerator. Just remember to keep the wet ingredients and dry ingredients in separate bowls until you’re ready to bake—this prevents the cooking soda from losing its leavening power. For the best texture, allow the batter to rest for 15 minutes after combining just before baking. You can also bake the muffins ahead, then store them in an airtight container for up to 3 days at room temperature. Enjoy freshly baked muffins, ideal for breakfast or a nutritious snack, with minimal effort!
What to Serve with Gluten Free Pumpkin Muffins with High Protein and Paleo Chocolate Chips
As the aroma of fresh-baked muffins fills your kitchen, it’s time to think about what delightful dishes can accompany this cozy treat.
- Creamy Oatmeal: A warm bowl of creamy oatmeal brings a heartiness that complements the muffins while adding a delightful texture contrast. Top with fresh fruit for brightness.
- Chai Tea Latte: Combining the warm spices of chai with the sweet pumpkin notes creates an inviting drink that elevates these muffins to the next level.
- Fruit Salad: A refreshing mix of seasonal fruits provides a vibrant balance to the rich flavors of the muffins, making for a delightful brunch spread.
- Savory Egg Muffins: These mini egg muffins add a protein boost and a savory note that pairs beautifully with the sweet complexity of pumpkin and chocolate.
- Maple Glazed Bacon: The smokiness of bacon drizzled with a touch of maple syrup offers a perfect salty-sweet balance alongside the muffins’ flavors.
- Greek Yogurt Parfait: Layer yogurt with fruits and nuts for a creamy, crunchy companion that complements the muffins and boosts nutrition for a complete meal.
- Black Coffee: The boldness of black coffee enhances the muffins’ sweetness, making it the perfect drink to cradle while savoring this fall-inspired treat.
- Pecan Pie Bites: For a sweet ending, serve these delightful bites alongside. Their nutty, caramel flavors echo the comforting fall vibes of the muffins.
- Pumpkin Spice Smoothie: Blend pumpkin with almond milk, bananas, and spices for a creamy and nutritious drink that harmonizes with the muffin’s flavors.
Storage Tips for Gluten Free Pumpkin Muffins
Room Temperature: Store the muffins in an airtight container at room temperature for up to 3 days. This keeps them soft and delicious, ready for snacking anytime.
Fridge: If you want to extend freshness, you can refrigerate them in an airtight container for up to a week. Just remember to warm them slightly before serving for the best texture!
Freezer: For longer storage, individually wrap the muffins in plastic wrap and freeze for up to 3 months. When you're ready to enjoy, simply reheat in the microwave or oven until warmed through.
Reheating: To retain moisture, reheat in the oven at 350°F (175°C) for about 10 minutes, or in the microwave for 15-20 seconds. You'll have your Gluten Free Pumpkin Muffins warm and ready to enjoy in no time!

Gluten Free Pumpkin Muffins with High Protein and Paleo Chocolate Chips Recipe FAQs
How do I select the best gluten-free flour?
When choosing gluten free 1-to-1 flour, look for a blend that includes a mixture of flours like rice, tapioca, and potato starch for optimal texture. Always check your package for quality certifications, and avoid any blends that contain gritty textures.
What is the best way to store these muffins?
Store your Gluten Free Pumpkin Muffins in an airtight container at room temperature for up to 3 days. If you want to extend their freshness, you can also refrigerate them for up to a week. Just make sure to warm them slightly before serving for that fresh-baked taste!
Can I freeze these muffins? If yes, how?
Absolutely! To freeze your muffins, individually wrap each one in plastic wrap or foil, then place them in a freezer-safe bag. They can be frozen for up to 3 months. When you’re ready to indulge, simply reheat in the oven at 350°F (175°C) for about 10 minutes, or in the microwave for 15-20 seconds for a warm and delightful treat.
Why are my muffins too dense or tough?
Overmixing the batter is a common culprit for dense muffins. When combining the wet and dry ingredients, mix until just combined, leaving a few streaks of flour. Additionally, ensure your baking powder and baking soda are fresh, as old leavening agents can impact the rise of your muffins.
Can my pets eat these muffins?
No, it’s best to keep these muffins away from pets. Ingredients like chocolate (even paleo versions) can be harmful to animals. Always stick to pet-friendly snacks for your furry friends.
How can I make these gluten-free muffins nut-free?
If you need a nut-free option, simply substitute the avocado oil with sunflower oil or another neutral oil. Also, ensure that your chocolate chips are free from any nut contamination by checking the packaging before use. Enjoy experimenting with modifications that suit your dietary needs!

Indulge in Gluten Free Pumpkin Muffins with High Protein Chips
Ingredients
Equipment
Method
- Preheat your oven to 375°F (190°C) and prepare a muffin tin.
- In a large bowl, whisk together the dry ingredients: gluten free flour, collagen peptides, pumpkin pie spice, baking powder, baking soda, and kosher salt.
- In another bowl, mix the wet ingredients: pumpkin puree, eggs, coconut sugar, avocado oil, and vanilla extract until smooth.
- Gently fold the dry ingredients into the wet mixture until just combined.
- Fold in the paleo chocolate chips and let the batter rest for about 15 minutes.
- Divide the batter among the muffin cups, filling each about three-quarters full.
- Bake for 22-25 minutes until tops spring back when pressed and a toothpick comes out clean.
- Cool the muffins in the tin for 15 minutes before transferring to a wire rack.





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